Download MendeleyCrystal structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5
Karthe, P., Kumarevel, T.S., Ebihara, A., Kuramitsu, S., Yokoyama, S.To be published.
2EGZ
Crystal structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5
- PDB DOI: https://doi.org/10.2210/pdb2EGZ/pdb
- Classification: LYASE
- Organism(s): Aquifex aeolicus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-02 Released: 2007-09-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.237
- R-Value Work: 0.220
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-dehydroquinate dehydratase | A, B [auth C] | 219 | Aquifex aeolicus | Mutation(s): 0 Gene Names: aroD EC: 4.2.1.10 |  |
UniProt | |||||
Find proteins for O66440 (Aquifex aeolicus (strain VF5)) Explore O66440 Go to UniProtKB: O66440 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O66440 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TLA Query on TLA | C [auth A], D [auth C] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.237
- R-Value Work: 0.220
- R-Value Observed: 0.220
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.937 | α = 90 |
| b = 67.614 | β = 99.2 |
| c = 60.238 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| BSS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2007-09-04 Deposition Author(s): Karthe, P., Kumarevel, T.S., Ebihara, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-09-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-03-13
Changes: Data collection, Database references, Derived calculations
