Download MendeleyCrystal Structure of Probable Thiosulfate Sulfurtransferase
Sakai, H., Ebihara, A., Kitamura, Y., Shinkai, A., Kuramitsu, S., Yokoyama, S.To be published.
2EG4
Crystal Structure of Probable Thiosulfate Sulfurtransferase
- PDB DOI: https://doi.org/10.2210/pdb2EG4/pdb
- Classification: TRANSFERASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-02-27 Released: 2008-03-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.249
- R-Value Work: 0.222
- R-Value Observed: 0.222
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable thiosulfate sulfurtransferase | 230 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 2.8.1 |  | |
UniProt | |||||
Find proteins for Q5SHV8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHV8 Go to UniProtKB: Q5SHV8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SHV8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable thiosulfate sulfurtransferase | 230 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 2.8.1 |  | |
UniProt | |||||
Find proteins for Q5SHV8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHV8 Go to UniProtKB: Q5SHV8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SHV8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ZN Query on ZN | C [auth A], I [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSO Query on CSO | B | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.249
- R-Value Work: 0.222
- R-Value Observed: 0.222
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.694 | α = 90 |
| b = 71.218 | β = 90 |
| c = 115.483 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| ADSC | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2008-03-04 Deposition Author(s): Sakai, H., Ebihara, A., Kitamura, Y., Shinkai, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2008-03-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2023-11-15
Changes: Data collection
