2EF6
Canavalia gladiata lectin complexed with Man1-3Man-OMe
- PDB DOI: https://doi.org/10.2210/pdb2EF6/pdb
- Classification: PLANT PROTEIN
- Organism(s): Canavalia gladiata
- Mutation(s): No 
- Deposited: 2007-02-21 Released: 2007-10-30 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.245 
- R-Value Work: 0.189 
- R-Value Observed: 0.192 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Concanavalin A | 237 | Canavalia gladiata | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P14894 (Canavalia gladiata) Explore P14894  Go to UniProtKB:  P14894 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14894 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MN Query on MN | J [auth A], L [auth B], N [auth C], P [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CA Query on CA | I [auth A], K [auth B], M [auth C], O [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.245 
- R-Value Work: 0.189 
- R-Value Observed: 0.192 
- Space Group: P 32
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.391 | α = 90 |
b = 69.391 | β = 90 |
c = 161.298 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MARCCD | data collection |
MOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2007-10-30  Deposition Author(s): Moreno, F.B.M.B., Bezerra, G.A., Oliveira, T.M., de Souza, E.P., da Rocha, B.A.M., Benevides, R.G., Delatorre, P., Cavada, B.S., de Azevedo Jr., W.F.
Revision History (Full details and data files)
- Version 1.0: 2007-10-30
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-11
Changes: Advisory, Database references, Source and taxonomy - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary