Download MendeleyCrystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens
Xie, Y., Kishishita, S., Murayama, K., Takemoto, C., Shirozu, M., Yokoyama, S.To be published.
2EAQ
Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens
- PDB DOI: https://doi.org/10.2210/pdb2EAQ/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Homo sapiens
- Mutation(s): No
- Deposited: 2007-01-31 Released: 2007-07-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.194
- R-Value Work: 0.160
- R-Value Observed: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| LIM domain only protein 7 | 90 | Homo sapiens | Mutation(s): 0 Gene Names: LMO7, FBX20, FBXO20, KIAA0858 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8WWI1 (Homo sapiens) Explore Q8WWI1 Go to UniProtKB: Q8WWI1 | |||||
PHAROS: Q8WWI1 GTEx: ENSG00000136153 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8WWI1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | B [auth A], C [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.194
- R-Value Work: 0.160
- R-Value Observed: 0.160
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.996 | α = 90 |
| b = 61.311 | β = 90 |
| c = 27.931 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| ADSC | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2007-07-31 Deposition Author(s): Xie, Y., Kishishita, S., Murayama, K., Takemoto, C., Shirozu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-07-31
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-03-13
Changes: Data collection, Database references, Derived calculations
