Download MendeleyCrystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8
Kawazoe, M., Takemoto, C., Kaminishi, T., Tatsuguchi, A., Shirouzu, M., Yokoyama, S.To be published.
2DYI
Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8
- PDB DOI: https://doi.org/10.2210/pdb2DYI/pdb
- Classification: RIBOSOME
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-09-14 Released: 2007-03-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.256
- R-Value Work: 0.192
- R-Value Observed: 0.192
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable 16S rRNA-processing protein rimM | 162 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: TTHA1033 |  | |
UniProt | |||||
Find proteins for Q5SJH5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJH5 Go to UniProtKB: Q5SJH5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SJH5 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.256
- R-Value Work: 0.192
- R-Value Observed: 0.192
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.328 | α = 90 |
| b = 53.103 | β = 90 |
| c = 70.437 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| DENZO | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2007-03-14 Deposition Author(s): Kawazoe, M., Takemoto, C., Kaminishi, T., Tatsuguchi, A., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-03-14
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2024-03-13
Changes: Data collection, Database references - Version 1.4: 2024-04-03
Changes: Refinement description
