Download MendeleyCrystal structure of the TT1209 from Thermus thermophilus HB8
Asada, Y., Sugahara, M., Shimizu, K., Yamamoto, H., Shimada, H., Misumi, Y., Nakamoto, T., Ono, N., Kunishima, N.To be published.
2DCT
Crystal structure of the TT1209 from Thermus thermophilus HB8
- PDB DOI: https://doi.org/10.2210/pdb2DCT/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-01-12 Released: 2006-01-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.209
- R-Value Work: 0.199
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hypothetical protein TTHA0104 | 105 | Thermus thermophilus HB8 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q5SM39 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SM39 Go to UniProtKB: Q5SM39 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SM39 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | D [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.209
- R-Value Work: 0.199
- R-Value Observed: 0.199
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.241 | α = 90 |
| b = 62.241 | β = 90 |
| c = 151.11 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| SCALEPACK | data scaling |
| PERON | model building |
| CNS | refinement |
| HKL-2000 | data reduction |
| PERON | phasing |
Entry History
Deposition Data
- Released Date: 2006-01-24 Deposition Author(s): Asada, Y., Sugahara, M., Shimizu, K., Yamamoto, H., Shimada, H., Nakamoto, T., Ono, N., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-01-24
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
