2D5W

The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.196 
  • R-Value Work: 0.186 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide

Morita, A., Sakai, N., Yao, M., Watanabe, N., Tanaka, I.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
peptide ABC transporter, peptide-binding protein
A, B
603Thermus thermophilus HB8Mutation(s): 0 
Gene Names: TTHA1634
UniProt
Find proteins for Q5SHU6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q5SHU6 
Go to UniProtKB:  Q5SHU6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5SHU6
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
pentapeptide A5Thermus thermophilus HB8Mutation(s): 0 
Gene Names: TTHA1634
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
pentapeptide B5Thermus thermophilus HB8Mutation(s): 0 
Gene Names: TTHA1634
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.196 
  • R-Value Work: 0.186 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 100.6α = 90
b = 109.2β = 90
c = 114.6γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
TRUNCATEdata reduction
SOLVEphasing
CNSrefinement
HKL-2000data reduction
CCP4data scaling

Structure Validation

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View more in-depth experimental data
Entry History 

Deposition Data

  • Released Date: 2006-10-17 
    • Deposition Author(s): Morita, A.

Revision History  (Full details and data files)

  • Version 1.0: 2006-10-17
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Source and taxonomy, Version format compliance