Download MendeleyCrystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A Resolution
Levdikov, V.M., Blagova, E.V., Fogg, M.J., Brannigan, J.A., Moroz, O.V., Wilkinson, A.J., Wilson, K.S.To be published.
2D30
Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A Resolution
- PDB DOI: https://doi.org/10.2210/pdb2D30/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus anthracis
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2005-09-21 Released: 2006-09-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.251
- R-Value Work: 0.164
- R-Value Observed: 0.168
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cytidine deaminase | 141 | Bacillus anthracis | Mutation(s): 0 Gene Names: cdd-2 EC: 3.5.4.5 |  | |
UniProt | |||||
Find proteins for A0A6L7GZQ8 (Bacillus anthracis) Explore A0A6L7GZQ8 Go to UniProtKB: A0A6L7GZQ8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A6L7GZQ8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A], D [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.251
- R-Value Work: 0.164
- R-Value Observed: 0.168
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 99.792 | α = 90 |
| b = 50.552 | β = 132.1 |
| c = 70.438 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-09-19 Deposition Author(s): Levdikov, V.M., Blagova, E.V., Fogg, M.J., Brannigan, J.A., Moroz, O.V., Wilkinson, A.J., Wilson, K.S., Structural Proteomics in Europe (SPINE)
Revision History (Full details and data files)
- Version 1.0: 2006-09-19
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
