Download MendeleyStructure of Mitochondrial Beta-Ketoacyl Synthase
Bunkoczi, G., Wu, X., Smee, C., Gileadi, O., Arrowsmith, C., Edwards, A., Sundstrom, M., Weigelt, J., von Delft, F., Oppermann, U.To be published.
2C9H
Structure of mitochondrial beta-ketoacyl synthase
- PDB DOI: https://doi.org/10.2210/pdb2C9H/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-12-12 Released: 2005-12-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.240
- R-Value Work: 0.177
- R-Value Observed: 0.181
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MITOCHONDRIAL BETA-KETOACYL SYNTHASE | 444 | Homo sapiens | Mutation(s): 0 EC: 2.3.1.41 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NWU1 (Homo sapiens) Explore Q9NWU1 Go to UniProtKB: Q9NWU1 | |||||
PHAROS: Q9NWU1 GTEx: ENSG00000151093 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9NWU1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | B [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.240
- R-Value Work: 0.177
- R-Value Observed: 0.181
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 116.725 | α = 90 |
| b = 58.056 | β = 90 |
| c = 58.987 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2005-12-13 Deposition Author(s): Bunkoczi, G., Wu, X., Smee, C., Gileadi, O., Arrowsmith, C., Edwards, A., Sundstrom, M., Weigelt, J., von Delft, F., Oppermann, U.
Revision History (Full details and data files)
- Version 1.0: 2005-12-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2018-01-24
Changes: Database references, Structure summary - Version 1.3: 2018-02-28
Changes: Source and taxonomy - Version 1.4: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
