2C4H
Torpedo californica acetylcholinesterase in complex with 500mM acetylthiocholine
- PDB DOI: https://doi.org/10.2210/pdb2C4H/pdb
- Classification: HYDROLASE
- Organism(s): Tetronarce californica
- Mutation(s): No 
- Deposited: 2005-10-19 Released: 2006-06-14 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.209 
- R-Value Work: 0.169 
- R-Value Observed: 0.169 
This is version 2.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ACETYLCHOLINESTERASE | 537 | Tetronarce californica | Mutation(s): 0  EC: 3.1.1.7 | ||
UniProt | |||||
Find proteins for P04058 (Tetronarce californica) Explore P04058  Go to UniProtKB:  P04058 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04058 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 6 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | B [auth A], C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
AT3 Query on AT3 | F [auth A], G [auth A] | ACETYLTHIOCHOLINE C7 H16 N O S GFFIJCYHQYHUHB-UHFFFAOYSA-N | |||
PGE Query on PGE | D [auth A], E [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
ACT Query on ACT | T [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
ACE Query on ACE | H [auth A] | ACETYL GROUP C2 H4 O IKHGUXGNUITLKF-UHFFFAOYSA-N | |||
CL Query on CL | I [auth A] J [auth A] K [auth A] L [auth A] M [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.209 
- R-Value Work: 0.169 
- R-Value Observed: 0.169 
- Space Group: P 31 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 111.99 | α = 90 |
b = 111.99 | β = 90 |
c = 137.12 | γ = 120 |
Software Name | Purpose |
---|---|
CNS | refinement |
XDS | data reduction |
XSCALE | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2006-06-14  Deposition Author(s): Colletier, J.P., Fournier, D., Greenblatt, H.M., Sussman, J.L., Zaccai, G., Silman, I., Weik, M.
Revision History (Full details and data files)
- Version 1.0: 2006-06-14
Type: Initial release - Version 1.1: 2011-05-07
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 2.0: 2018-07-18
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2019-04-03
Changes: Data collection, Derived calculations, Experimental preparation - Version 2.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 2.3: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary