2BAZ

Structure of YosS, a putative dUTPase from Bacillus subtilis

PDB DOI: https://doi.org/10.2210/pdb2BAZ/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Bacillus subtilis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2005-10-16 Released: 2006-10-17
Deposition Author(s): Liang, Y.-H., Wang, J., Su, X.-D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.243
R-Value Work: 0.217
R-Value Observed: 0.225

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Structure of YosS, a putative dUTPase from Bacillus subtilis

Wang, J., Liang, Y.-H., Su, X.-D.

To be published.

Macromolecule Content

Total Structure Weight: 48.52 kDa
Atom Count: 3,191
Modelled Residue Count: 384
Deposited Residue Count: 426
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein BSU20020	A, B, C	142	Bacillus subtilis	Mutation(s): 0
UniProt
Find proteins for O34919 (Bacillus subtilis (strain 168)) Explore O34919 Go to UniProtKB: O34919
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O34919
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.243
R-Value Work: 0.217
R-Value Observed: 0.225
Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.5	α = 90
b = 116.5	β = 90
c = 56.8	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
MAR345	data collection

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-10-17

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-10-17
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2024-03-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.