Download MendeleyCrystal structure of dTDP-4-dehydrorhamnose 3,5-epimerase from sulfolobus tokodaii
Rajakannan, V., Kondo, K., Mizushima, T., Suzuki, A., Yamane, T.To be published.
2B9U
Crystal structure of dTDP-4-dehydrorhamnose 3,5-epimerase from sulfolobus tokodaii
- PDB DOI: https://doi.org/10.2210/pdb2B9U/pdb
- Classification: ISOMERASE
- Organism(s): Sulfurisphaera tokodaii str. 7
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2005-10-13 Released: 2006-10-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.07 Å
- R-Value Free: 0.257
- R-Value Work: 0.203
- R-Value Observed: 0.209
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase | 176 | Sulfurisphaera tokodaii str. 7 | Mutation(s): 0 Gene Names: ARCHAEA EC: 5.1.3.13 |  | |
UniProt | |||||
Find proteins for Q96Z62 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q96Z62 Go to UniProtKB: Q96Z62 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q96Z62 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.07 Å
- R-Value Free: 0.257
- R-Value Work: 0.203
- R-Value Observed: 0.209
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.788 | α = 90 |
| b = 229.495 | β = 96.95 |
| c = 74.583 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-10-13 Deposition Author(s): Rajakannan, V., Kondo, K., Mizushima, T., Suzuki, A., Yamane, T.
Revision History (Full details and data files)
- Version 1.0: 2006-10-13
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2023-10-25
Changes: Advisory, Data collection, Database references, Refinement description
