Download MendeleyCrystal Structure of putative NAG isomerase from Salmonella typhimurium
Kumaran, D., Swaminathan, S.To be published.
2AFA
Crystal Structure of putative NAG isomerase from Salmonella typhimurium
- PDB DOI: https://doi.org/10.2210/pdb2AFA/pdb
- Classification: ISOMERASE
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-07-25 Released: 2005-08-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.246
- R-Value Work: 0.207
- R-Value Observed: 0.207
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NAG isomerase | 425 | Salmonella enterica subsp. enterica serovar Typhimurium | Mutation(s): 9 Gene Names: yihS |  | |
UniProt | |||||
Find proteins for Q8ZKT7 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZKT7 Go to UniProtKB: Q8ZKT7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZKT7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.246
- R-Value Work: 0.207
- R-Value Observed: 0.207
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 88.933 | α = 106.81 |
| b = 91.14 | β = 103.52 |
| c = 95.102 | γ = 111.79 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data scaling |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2005-08-16 Deposition Author(s): Kumaran, D., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2005-08-16
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary
