Download MendeleyCrystal structure of putative kinase (ZP_00765535.1) from Chloroflexus aurantiacus J-10-fl at 1.70 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2RHM
Crystal structure of a putative kinase (caur_3907) from chloroflexus aurantiacus j-10-fl at 1.70 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2RHM/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Chloroflexus aurantiacus J-10-fl
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-10-09 Released: 2007-11-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.221
- R-Value Work: 0.181
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative kinase | 193 | Chloroflexus aurantiacus J-10-fl | Mutation(s): 0 Gene Names: ZP_00765535.1, CaurDRAFT_1197 |  | |
UniProt | |||||
Find proteins for A9WDG5 (Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)) Explore A9WDG5 Go to UniProtKB: A9WDG5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9WDG5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BEZ Query on BEZ | G [auth B], K [auth D] | BENZOIC ACID C7 H6 O2 WPYMKLBDIGXBTP-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | H [auth B], L [auth D], M [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | E [auth A], F [auth B], I [auth C], J [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.221
- R-Value Work: 0.181
- R-Value Observed: 0.183
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M32RHM
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.93 | α = 90 |
| b = 76.79 | β = 90 |
| c = 129.11 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHELX | phasing |
| MolProbity | model building |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| XDS | data reduction |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-11-20 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-11-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Author supporting evidence, Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
