Download MendeleyCrystal structure of NudC domain-containing protein 2 (13542905) from Mus musculus at 1.95 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2RH0
Crystal structure of NudC domain-containing protein 2 (13542905) from Mus musculus at 1.95 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2RH0/pdb
- Classification: NUCLEAR PROTEIN
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-10-05 Released: 2007-10-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.235
- R-Value Work: 0.190
- R-Value Observed: 0.192
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NudC domain-containing protein 2 | 157 | Mus musculus | Mutation(s): 0 Gene Names: 13542905, Nudcd2, D11Ertd603e |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9CQ48 (Mus musculus) Explore Q9CQ48 Go to UniProtKB: Q9CQ48 | |||||
IMPC: MGI:1277103 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9CQ48 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | E [auth B], F [auth C], G [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.235
- R-Value Work: 0.190
- R-Value Observed: 0.192
- Space Group: P 1
- Diffraction Data: https://doi.org/10.18430/M32RH0
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.568 | α = 74.51 |
| b = 64.504 | β = 81.06 |
| c = 64.423 | γ = 81.22 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SOLVE | phasing |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-16 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-10-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
