Download MendeleyCrystal structure of hypothetical protein (NP_895059.1) from Prochlorococcus marinus MIT9313 at 1.68 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2OC5
Crystal structure of a ferritin-like protein (pmt1231) from prochlorococcus marinus str. mit 9313 at 1.68 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2OC5/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Prochlorococcus marinus str. MIT 9313
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-12-20 Released: 2007-02-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.200
- R-Value Work: 0.164
- R-Value Observed: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein | 244 | Prochlorococcus marinus str. MIT 9313 | Mutation(s): 8 Gene Names: NP_895059.1 |  | |
UniProt | |||||
Find proteins for Q7V6D4 (Prochlorococcus marinus (strain MIT 9313)) Explore Q7V6D4 Go to UniProtKB: Q7V6D4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7V6D4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| FE Query on FE | B [auth A], C [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| UNL Query on UNL | E [auth A] | Unknown ligand VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.200
- R-Value Work: 0.164
- R-Value Observed: 0.166
- Space Group: P 43 21 2
- Diffraction Data: https://doi.org/10.18430/M32OC5
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.35 | α = 90 |
| b = 77.35 | β = 90 |
| c = 116.89 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SOLVE | phasing |
| REFMAC | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2007-02-13 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-02-13
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
