Download MendeleyThe crystal structure of a conserved putative domain from Neisseria meningitidis MC58
Tan, K., Volkart, L., Gu, M., Joachimiak, A.To be published.
2O3G
Structural Genomics, the crystal structure of a conserved putative domain from Neisseria meningitidis MC58
- PDB DOI: https://doi.org/10.2210/pdb2O3G/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Neisseria meningitidis MC58
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2006-12-01 Released: 2007-01-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.55 Å
- R-Value Free: 0.260
- R-Value Work: 0.242
- R-Value Observed: 0.243
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative protein | 92 | Neisseria meningitidis MC58 | Mutation(s): 1 Gene Names: NMB1485 |  | |
UniProt | |||||
Find proteins for Q9JYP7 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q9JYP7 Go to UniProtKB: Q9JYP7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9JYP7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.55 Å
- R-Value Free: 0.260
- R-Value Work: 0.242
- R-Value Observed: 0.243
- Space Group: I 4 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 129.828 | α = 90 |
| b = 129.828 | β = 90 |
| c = 129.828 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2007-01-02 Deposition Author(s): Tan, K., Volkart, L., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-01-02
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations
