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Structural investigation of the GlmS ribozyme bound to its catalytic cofactor
 
 
DOI:10.2210/pdb2nz4/pdb   NDB ID: PR0249
2NZ4
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Structural Protein/rna
    Structure Weight: 244404.06
     
    Molecule:substrate strand RNA 13-mer
    Polymer:1Type:polyribonucleotideLength:13
    Chains:E, F, G, H
    Molecule:GlmS ribozyme
    Polymer:2Type:polyribonucleotideLength:141
    Chains:P, Q, R, S
    Molecule:U1 Small Nuclear Ribonucleoprotein A
    Polymer:3Type:polypeptide(L)Length:94
    Chains:A, B, C, D
    Fragment:RNA Binding Domain
    Mutation:Y31H, Q36R
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Escherichia coli bl21  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    GLP     GLUCOSAMINE 6-PHOSPHATE C6 H14 N O8 P 3DLigand Explorer Link out to Ligand Expos:GLP Link out to SuperLigands:GLP Link out to SuperHapten:GLP
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    A2M 2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE (parent: A)(type: rnaLinking) C11 H16 N5 O7 P 3D Ligand Explorer Link out to Ligand Expos:A2M Link out to SuperLigands:A2M Link out to SuperHapten:A2M 2D
    GTP GUANOSINE-5'-TRIPHOSPHATE (parent: G)(type: rnaLinking) C10 H16 N5 O14 P3 3D Ligand Explorer Link out to Ligand Expos:GTP Link out to SuperLigands:GTP Link out to SuperHapten:GTP 2D
     
     
  •  
    Move Section Derived Data Hide
     
     
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< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Cochrane, J.C.

    Deposition:   2006-11-22
    Release:   2007-01-16
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.50
    R-Value: 0.224 (obs.)
    R-Free: 0.269
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 48.13 α = 90.00 
    b = 234.16 β = 90.65 
    c = 105.00 γ = 90.00