2L3B

Solution NMR structure of the BT_0084 lipoprotein from Bacteroides thetaiotaomicron, Northeast Structural Genomics Consortium Target BtR376


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.9 of the entry. See complete history


Literature

Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron.

Ramelot, T.A.Yang, Y.Xiao, R.Acton, T.B.Everett, J.K.Montelione, G.T.Kennedy, M.A.

(2012) Proteins 80: 667-670

  • DOI: https://doi.org/10.1002/prot.23235
  • Primary Citation of Related Structures:  
    2L3B, 2L7Q

  • PubMed Abstract: 

    Here we describe the solution NMR structure of the 120 amino acid fragment of BT_0084, without the N-terminal lipoprotein targeting sequence, encoded in a conjugative transposon (CTn) in the genome of Bacteroides thetaiotamicron. BT_0084 belongs to a conserved family of TraQ lipoproteins that are encoded at the end of the tra operon, which contains genes essential for transfer of CTns. The structure belongs to the immunoglobulin superfamily and shares structural similarity, albeit low sequence identity (< 15%), to other proteins involved in pili production for bacterial cell attachment. Although its role in repression of CTn transfer remains to be determined, the structure of BT_0084 reported here represents the first from the Bacteroides TraQ family and should facilitate further understanding of the tra operon-regulated transfer of CTns.


  • Organizational Affiliation

    Department of Chemistry and Biochemistry, Miami University, Oxford, Ohio 45056 and the Northeast Structural Genomics Consortium. ramelota@muohio.edu.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Conserved protein found in conjugate transposon130Bacteroides thetaiotaomicronMutation(s): 0 
Gene Names: BT_0084
UniProt
Find proteins for Q8ABM6 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50))
Explore Q8ABM6 
Go to UniProtKB:  Q8ABM6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ABM6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2010-11-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2011-12-14
    Changes: Database references
  • Version 1.3: 2012-02-22
    Changes: Structure summary
  • Version 1.4: 2012-07-18
    Changes: Database references
  • Version 1.5: 2013-01-30
    Changes: Database references
  • Version 1.6: 2013-03-06
    Changes: Database references
  • Version 1.7: 2020-02-05
    Changes: Data collection, Database references, Other
  • Version 1.8: 2023-06-14
    Changes: Database references, Other
  • Version 1.9: 2023-07-26
    Changes: Database references