2I07
Human Complement Component C3b
- PDB DOI: https://doi.org/10.2210/pdb2I07/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Mutation(s): No 
- Deposited: 2006-08-10 Released: 2006-10-24 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 4.00 Å
- R-Value Free: 0.323 
- R-Value Work: 0.273 
- R-Value Observed: 0.275 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Complement C3b | 645 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01024 (Homo sapiens) Explore P01024  Go to UniProtKB:  P01024 | |||||
PHAROS:  P01024 GTEx:  ENSG00000125730  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01024 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Complement C3b | 915 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01024 (Homo sapiens) Explore P01024  Go to UniProtKB:  P01024 | |||||
PHAROS:  P01024 GTEx:  ENSG00000125730  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01024 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 4.00 Å
- R-Value Free: 0.323 
- R-Value Work: 0.273 
- R-Value Observed: 0.275 
- Space Group: P 21 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 123.91 | α = 90 |
b = 128.537 | β = 90 |
c = 147.034 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
DNA | data collection |
MOSFLM | data reduction |
CCP4 | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2006-10-24  Deposition Author(s): Janssen, B.J.C., Christodoulidou, A., McCarthy, A., Lambris, J.D., Gros, P.
Revision History (Full details and data files)
- Version 1.0: 2006-10-24
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-08-30
Changes: Data collection, Database references, Refinement description, Structure summary