2HT1

Structural Insights into RNA-Dependent Ring Closure and ATPase Activation by the Rho Termination Factor.

(2006) Cell 127: 553-564

• PubMed: 17081977 Search on PubMed
• DOI: https://doi.org/10.1016/j.cell.2006.08.051
• Primary Citation of Related Structures:  
  2HT1


• PubMed Abstract: 
  

  Hexameric helicases and translocases are required for numerous essential nucleic-acid transactions. To better understand the mechanisms by which these enzymes recognize target substrates and use nucleotide hydrolysis to power molecular movement, we have determined the structure of the Rho transcription termination factor, a hexameric RNA/DNA helicase, with single-stranded RNA bound to the motor domains of the protein. The structure reveals a closed-ring "trimer of dimers" conformation for the hexamer that contains an unanticipated arrangement of conserved loops required for nucleic-acid translocation. RNA extends across a shallow intersubunit channel formed by conserved amino acids required for RNA-stimulated ATP hydrolysis and translocation and directly contacts a conserved lysine, just upstream of the catalytic GKT triad, in the phosphate-binding (P loop) motif of the ATP-binding pocket. The structure explains the molecular effects of numerous mutations and provides new insights into the links between substrate recognition, ATP turnover, and coordinated strand movement.

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Organizational Affiliation: 

Department of Molecular and Cell Biology, University of California, Berkeley, 327B Hildebrand Hall #3206, Berkeley, CA 94720, USA.