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Structure of Fab DNA-1 complexed with a stem-loop DNA ligand
 
 
DOI:10.2210/pdb2fr4/pdb   NDB ID: PD0785
2FR4
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Immune System/dna
    Structure Weight: 103383.00
     
    Molecule:5'-D(*CP*TP*GP*CP*CP*TP*TP*CP*AP*G)-3'
    Polymer:1Type:polydeoxyribonucleotideLength:10
    Chains:M, N
    Molecule:antibody light chain FAB
    Polymer:2Type:polypeptide(L)Length:214
    Chains:A, L
    Fragment:antigen-binding fragment
    Molecule:antibody heavy chain FAB
    Polymer:3Type:polypeptide(L)Length:230
    Chains:B, H
    Fragment:antigen-binding fragment
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Mus musculus Go to NCBI Taxonomy entry Common Name: House mouse Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Mus musculus Go to NCBI Taxonomy entry Common Name: House mouse Expression System: Escherichia coli  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1I8M  Same Fab complexed with dT5 
    1XF2  Same Fab complexed with dT3 
    1XF3  Same Fab, uncomplexed 
    1XF4  Same Fab, uncomplexed 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    PG4     TETRAETHYLENE GLYCOL C8 H18 O5 3DLigand Explorer Link out to Ligand Expos:PG4 Link out to SuperLigands:PG4 Link out to SuperHapten:PG4
     
     
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< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Tanner, J.J.,   Ou, Z.

    Deposition:   2006-01-18
    Release:   2007-01-09
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 1.95
    R-Value: 0.210 (obs.)
    R-Free: 0.256
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 84.76 α = 90.00 
    b = 90.45 β = 90.00 
    c = 128.12 γ = 90.00