2E47
Crystal Structure Analysis of the clock protein EA4 (glycosylation form)
- PDB DOI: https://doi.org/10.2210/pdb2E47/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Bombyx mori
- Expression System: Bombyx mori
- Mutation(s): No 
- Deposited: 2006-12-05 Released: 2007-12-11 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.251 
- R-Value Work: 0.170 
- R-Value Observed: 0.174 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Time interval measuring enzyme TIME | 156 | Bombyx mori | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q08J22 (Bombyx mori) Explore Q08J22  Go to UniProtKB:  Q08J22 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q08J22 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | F [auth A], H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CU Query on CU | E [auth A], G [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.251 
- R-Value Work: 0.170 
- R-Value Observed: 0.174 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 47.098 | α = 90 |
b = 73.894 | β = 104.07 |
c = 47.446 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2007-12-11  Deposition Author(s): Park, S.-Y., Hiraki, T.
Revision History (Full details and data files)
- Version 1.0: 2007-12-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary