Download MendeleyGlutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex
Sekine, S., Yokoyama, S.To be published.
2CV1
Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex
- PDB DOI: https://doi.org/10.2210/pdb2CV1/pdb
- NAKB: 2CV1
- Classification: ligase/RNA
- Organism(s): Thermus thermophilus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-05-31 Released: 2006-09-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.41 Å
- R-Value Free: 0.277
- R-Value Work: 0.221
- R-Value Observed: 0.221
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| glutamyl-tRNA synthetase | C [auth A], D [auth B] | 468 | Thermus thermophilus | Mutation(s): 0 EC: 6.1.1.17 |  |
UniProt | |||||
Find proteins for P27000 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P27000 Go to UniProtKB: P27000 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P27000 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| tRNA | A [auth C], B [auth D] | 75 | N/A |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP Query on ATP | I [auth A], L [auth B] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N |  | ||
| GAU Query on GAU | J [auth A], K [auth A] | (4S)-4-AMINO-5-HYDROXYPENTANOIC ACID C5 H11 N O3 JPYGFLFUDLRNKX-BYPYZUCNSA-N |  | ||
| MG Query on MG | E [auth C], F [auth C], G [auth D], H [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.41 Å
- R-Value Free: 0.277
- R-Value Work: 0.221
- R-Value Observed: 0.221
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 110.624 | α = 90 |
| b = 218.818 | β = 90 |
| c = 134.858 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2006-09-05 Deposition Author(s): Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-09-05
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Database references, Derived calculations
