Download MendeleyCrystal structure of YJJV, TATD homolog from Escherichia coli K12, at 1.8 A resolution
Malashkevich, V.N., Xiang, D.F., Raushel, F.M., Almo, S.C.To be published.
1ZZM
Crystal structure of YJJV, TATD Homolog from Escherichia coli k12, at 1.8 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1ZZM/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Escherichia coli
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2005-06-14 Released: 2005-06-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.231
- R-Value Work: 0.171
- R-Value Observed: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| putative deoxyribonuclease yjjV | 259 | Escherichia coli | Mutation(s): 0 EC: 3.1.21 |  | |
UniProt | |||||
Find proteins for P39408 (Escherichia coli (strain K12)) Explore P39408 Go to UniProtKB: P39408 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P39408 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| P33 Query on P33 | F [auth A] | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | B [auth A], C [auth A], D [auth A], E [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.231
- R-Value Work: 0.171
- R-Value Observed: 0.171
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.186 | α = 90 |
| b = 45.007 | β = 100.75 |
| c = 57.824 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| MAR345 | data collection |
| SCALEPACK | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2005-06-28 Deposition Author(s): Malashkevich, V.N., Xiang, D.F., Raushel, F.M., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2005-06-28
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 1.4: 2021-02-03
Changes: Derived calculations, Structure summary - Version 1.5: 2023-08-23
Changes: Data collection, Database references, Refinement description
