Download MendeleyThe crystal structure of 3-hydroxyanthranilate 3,4-dioxygenase from Saccharomyces cerevisiae
Li, X., Guo, M., Teng, M., Niu, L.To be published.
1ZVF
The crystal structure of 3-hydroxyanthranilate 3,4-dioxygenase from Saccharomyces cerevisiae
- PDB DOI: https://doi.org/10.2210/pdb1ZVF/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Saccharomyces cerevisiae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-06-02 Released: 2006-06-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.41 Å
- R-Value Free: 0.268
- R-Value Work: 0.217
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-hydroxyanthranilate 3,4-dioxygenase | 176 | Saccharomyces cerevisiae | Mutation(s): 0 EC: 1.13.11.6 |  | |
UniProt | |||||
Find proteins for P47096 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47096 Go to UniProtKB: P47096 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P47096 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | C [auth A], D [auth A], E [auth B], F [auth B] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.41 Å
- R-Value Free: 0.268
- R-Value Work: 0.217
- R-Value Observed: 0.220
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.104 | α = 90 |
| b = 66.195 | β = 90 |
| c = 130.188 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| SHARP | phasing |
Entry History
Revision History (Full details and data files)
- Version 1.0: 2006-06-02
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 1.4: 2024-03-13
Changes: Data collection, Database references, Derived calculations
