Download MendeleyStructure of a putative transcriptional regulator from Streptococcus pneumoniae
Cuff, M.E., Zhou, M., Joachimiak, A.To be published.
1Z72
Structure of a putative transcriptional regulator from Streptococcus pneumoniae
- PDB DOI: https://doi.org/10.2210/pdb1Z72/pdb
- Classification: Transcription Regulator
- Organism(s): Streptococcus pneumoniae TIGR4
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2005-03-23 Released: 2005-05-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.167
- R-Value Work: 0.151
- R-Value Observed: 0.152
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| transcriptional regulator, putative | 225 | Streptococcus pneumoniae TIGR4 | Mutation(s): 4 Gene Names: SP0716 |  | |
UniProt | |||||
Find proteins for A0A0H2UP67 (Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)) Explore A0A0H2UP67 Go to UniProtKB: A0A0H2UP67 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H2UP67 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACY Query on ACY | C [auth A], E [auth B], F [auth B] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| MG Query on MG | D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.167
- R-Value Work: 0.151
- R-Value Observed: 0.152
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 116.023 | α = 90 |
| b = 122.039 | β = 90 |
| c = 46.48 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| O | model building |
| Coot | model building |
| CCP4 | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2005-05-17 Deposition Author(s): Cuff, M.E., Zhou, M., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2005-05-17
Type: Initial release - Version 1.1: 2007-11-12
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
