1Z3T
Structure of Phanerochaete chrysosporium cellobiohydrolase Cel7D (CBH58) in complex with cellobiose
- PDB DOI: https://doi.org/10.2210/pdb1Z3T/pdb
- Classification: HYDROLASE
- Organism(s): Phanerodontia chrysosporium
- Mutation(s): No 
- Deposited: 2005-03-14 Released: 2005-04-26 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.199 
- R-Value Work: 0.159 
- R-Value Observed: 0.161 
This is version 3.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
cellulase | 431 | Phanerodontia chrysosporium | Mutation(s): 0  EC: 3.2.1.91 | ||
UniProt | |||||
Find proteins for Q7LIJ0 (Phanerodontia chrysosporium) Explore Q7LIJ0  Go to UniProtKB:  Q7LIJ0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q7LIJ0 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
PCA Query on PCA | A | L-PEPTIDE LINKING | C5 H7 N O3 | GLN |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900005 Query on PRD_900005 | B | beta-cellobiose | Oligosaccharide / Metabolism |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.199 
- R-Value Work: 0.159 
- R-Value Observed: 0.161 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 87.414 | α = 90 |
b = 46.842 | β = 102.99 |
c = 99.488 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2005-04-26  Deposition Author(s): Ubhayasekera, W., Stahlberg, J., Mowbray, S.L.
Revision History (Full details and data files)
- Version 1.0: 2005-04-26
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2019-12-25
Changes: Database references, Derived calculations, Polymer sequence - Version 3.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 3.1: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary