1YXI
R-State AMP Complex Reveals Initial Steps of the Quaternary Transition of Fructose-1,6-bisphosphatase
- PDB DOI: https://doi.org/10.2210/pdb1YXI/pdb
- Classification: HYDROLASE
- Organism(s): Sus scrofa
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-02-21 Released: 2005-03-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.242
- R-Value Work: 0.199
- R-Value Observed: 0.199
This is version 1.9 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fructose-1,6-bisphosphatase | 337 | Sus scrofa | Mutation(s): 1 Gene Names: FBP1, FBP EC: 3.1.3.11 |  | |
UniProt | |||||
Find proteins for P00636 (Sus scrofa) Explore P00636 Go to UniProtKB: P00636 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00636 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| F6P Query on F6P | B [auth A] | 6-O-phosphono-beta-D-fructofuranose C6 H13 O9 P BGWGXPAPYGQALX-ARQDHWQXSA-N |  | ||
| PO4 Query on PO4 | C [auth A], D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| MG Query on MG | E [auth A], F [auth A], G [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.242
- R-Value Work: 0.199
- R-Value Observed: 0.199
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.79 | α = 90 |
| b = 82.8 | β = 90 |
| c = 165.51 | γ = 90 |
| Software Name | Purpose |
|---|---|
| TRUNCATE | data reduction |
| AMoRE | phasing |
| CNS | refinement |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2005-03-15 Deposition Author(s): Iancu, C.V., Mukund, S., Fromm, H.J., Honzatko, R.B.
Revision History (Full details and data files)
- Version 1.0: 2005-03-15
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2011-11-16
Changes: Atomic model - Version 1.4: 2017-10-11
Changes: Refinement description - Version 1.5: 2018-01-31
Changes: Experimental preparation - Version 1.6: 2018-04-04
Changes: Data collection - Version 1.7: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.8: 2021-10-20
Changes: Database references, Structure summary - Version 1.9: 2023-08-23
Changes: Data collection, Refinement description
