Download MendeleyRe-engineering topology of the homodimeric ROP protein into a single-chain 4-helix bundle.
Sagermann, M., Emery, S.C., Sander, C.To be published.
1YO7
Re-engineering topology of the homodimeric ROP protein into a single-chain 4-helix bundle
- PDB DOI: https://doi.org/10.2210/pdb1YO7/pdb
- Classification: REPLICATION REGULATOR
- Organism(s): Escherichia coli
- Expression System: Escherichia coli K-12
- Mutation(s): Yes
- Deposited: 2005-01-26 Released: 2005-02-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.310
- R-Value Work: 0.216
- R-Value Observed: 0.224
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Regulatory protein rop | 120 | Escherichia coli | Mutation(s): 1 Gene Names: rop |  | |
UniProt | |||||
Find proteins for P03051 (Escherichia coli) Explore P03051 Go to UniProtKB: P03051 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P03051 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.310
- R-Value Work: 0.216
- R-Value Observed: 0.224
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.607 | α = 90 |
| b = 52.83 | β = 94.99 |
| c = 50.36 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| XDS | data reduction |
| MLPHARE | phasing |
| CNS | refinement |
| AMoRE | phasing |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2005-02-15 Deposition Author(s): Sagermann, M., Emery, S.C., Sander, C.
Revision History (Full details and data files)
- Version 1.0: 2005-02-15
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-08-02
Changes: Refinement description, Source and taxonomy - Version 1.4: 2017-10-11
Changes: Refinement description - Version 1.5: 2021-10-20
Changes: Database references, Derived calculations - Version 1.6: 2023-08-23
Changes: Data collection, Refinement description
