Download MendeleyCrystal structure of the N-acetylglucosamine-6-phosphate deacetylase from Escherichia Coli
Fedorov, A.A., Fedorov, E.V., Xiang, D.F., Raushel, F.M., Almo, S.C.To be published.
1YMY
Crystal Structure of the N-Acetylglucosamine-6-phosphate deacetylase from Escherichia coli K12
- PDB DOI: https://doi.org/10.2210/pdb1YMY/pdb
- Classification: HYDROLASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2005-01-21 Released: 2005-02-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.243
- R-Value Work: 0.212
- R-Value Observed: 0.219
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N-acetylglucosamine-6-phosphate deacetylase | 382 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: nagA EC: 3.5.1.25 |  | |
UniProt | |||||
Find proteins for P0AF18 (Escherichia coli (strain K12)) Explore P0AF18 Go to UniProtKB: P0AF18 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0AF18 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.243
- R-Value Work: 0.212
- R-Value Observed: 0.219
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.226 | α = 90 |
| b = 114.023 | β = 90 |
| c = 80.215 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2005-02-01 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Xiang, D.F., Raushel, F.M., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2005-02-01
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2021-02-03
Changes: Structure summary - Version 1.4: 2024-02-14
Changes: Data collection, Database references
