Download MendeleyCrystal Structure of a Hypothetical protein, hydrolase haloacid dehalogenase-like family
Seetharaman, J., Swaminathan, S.To be published.
1YDF
Crystal structure of a HAD-like phosphatase from Streptococcus pneumoniae
- PDB DOI: https://doi.org/10.2210/pdb1YDF/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Streptococcus pneumoniae TIGR4
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-12-23 Released: 2005-01-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.267
- R-Value Work: 0.217
- R-Value Observed: 0.217
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hydrolase, haloacid dehalogenase-like family | 257 | Streptococcus pneumoniae TIGR4 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A0H2UQJ9 (Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)) Explore A0A0H2UQJ9 Go to UniProtKB: A0A0H2UQJ9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H2UQJ9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.267
- R-Value Work: 0.217
- R-Value Observed: 0.217
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.43 | α = 90 |
| b = 99.929 | β = 90 |
| c = 39.841 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2005-01-18 Deposition Author(s): Seetharaman, J., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2005-01-18
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-14
Changes: Data collection, Database references
