Download MendeleyStructure of a putative methyltransferase from Thermoplasma acidophilum.
Cuff, M.E., Xu, X., Edwards, A., Savchenko, A., Sanishvili, R., Joachimiak, A.To be published.
1YB2
Structure of a putative methyltransferase from Thermoplasma acidophilum.
- PDB DOI: https://doi.org/10.2210/pdb1YB2/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Thermoplasma acidophilum DSM 1728
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-12-18 Released: 2005-02-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.247
- R-Value Work: 0.199
- R-Value Observed: 0.201
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hypothetical protein Ta0852 | 275 | Thermoplasma acidophilum DSM 1728 | Mutation(s): 11 Gene Names: Ta0852 |  | |
UniProt | |||||
Find proteins for Q9HJW1 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)) Explore Q9HJW1 Go to UniProtKB: Q9HJW1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9HJW1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.247
- R-Value Work: 0.199
- R-Value Observed: 0.201
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.316 | α = 90 |
| b = 60.557 | β = 105.12 |
| c = 65.841 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2005-02-01 Deposition Author(s): Cuff, M.E., Xu, X., Edwards, A., Savchenko, A., Sanishvili, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2005-02-01
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Source and taxonomy, Version format compliance
