Download MendeleyCrystal structure of tatD DNase from Escherichia coli at 2.0 A resolution
Malashkevich, V.N., Xiang, D.F., Raushel, F.M., Almo, S.C.To be published.
1XWY
Crystal structure of tatD deoxyribonuclease from Escherichia coli K12 at 2.0 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1XWY/pdb
- Classification: HYDROLASE
- Organism(s): Escherichia coli
- Expression System: Escherichia coli K-12
- Mutation(s): No
- Deposited: 2004-11-02 Released: 2005-01-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.216
- R-Value Work: 0.171
- R-Value Observed: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Deoxyribonuclease tatD | 264 | Escherichia coli | Mutation(s): 0 Gene Names: tatD, mttC EC: 3.1.21 |  | |
UniProt | |||||
Find proteins for P27859 (Escherichia coli (strain K12)) Explore P27859 Go to UniProtKB: P27859 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P27859 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.216
- R-Value Work: 0.171
- R-Value Observed: 0.171
- Space Group: P 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 73.885 | α = 90 |
| b = 73.885 | β = 90 |
| c = 67.824 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2005-01-25 Deposition Author(s): Malashkevich, V.N., Xiang, D.F., Raushel, F.M., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2005-01-25
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 1.4: 2021-02-03
Changes: Derived calculations, Structure summary - Version 1.5: 2023-08-23
Changes: Data collection, Database references, Refinement description
