Download MendeleyCrystal structure of Nucleoside diphosphate kinase B from Plasmodium falciparum
Robien, M.A., Bosch, J., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa ConsortiumTo be published.
1XIQ
Plasmodium falciparum Nucleoside diphosphate kinase B
- PDB DOI: https://doi.org/10.2210/pdb1XIQ/pdb
- Classification: TRANSFERASE
- Organism(s): Plasmodium falciparum 3D7
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-09-21 Released: 2004-10-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.05 Å
- R-Value Free: 0.286
- R-Value Work: 0.229
- R-Value Observed: 0.232
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nucleoside diphosphate kinase B | 157 | Plasmodium falciparum 3D7 | Mutation(s): 0 Gene Names: PF13_0349 EC: 2.7.4.6 |  | |
UniProt | |||||
Find proteins for Q8ID43 (Plasmodium falciparum (isolate 3D7)) Explore Q8ID43 Go to UniProtKB: Q8ID43 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ID43 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.05 Å
- R-Value Free: 0.286
- R-Value Work: 0.229
- R-Value Observed: 0.232
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.593 | α = 90 |
| b = 112.424 | β = 119.05 |
| c = 68.59 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2004-10-12 Deposition Author(s): Robien, M.A., Bosch, J., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
Revision History (Full details and data files)
- Version 1.0: 2004-10-12
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2018-01-31
Changes: Database references - Version 1.4: 2024-02-14
Changes: Data collection, Database references, Refinement description
