1XHB
The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1
- PDB DOI: https://doi.org/10.2210/pdb1XHB/pdb
- Classification: TRANSFERASE
- Organism(s): Mus musculus
- Expression System: Komagataella pastoris
- Mutation(s): No 
- Deposited: 2004-09-17 Released: 2004-10-26 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.255 
- R-Value Work: 0.218 
- R-Value Observed: 0.218 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Polypeptide N-acetylgalactosaminyltransferase 1 | 472 | Mus musculus | Mutation(s): 0  Gene Names: Galnt1 EC: 2.4.1.41 | ||
UniProt | |||||
Find proteins for O08912 (Mus musculus) Explore O08912  Go to UniProtKB:  O08912 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O08912 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MN Query on MN | C [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CA Query on CA | D [auth A], E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.255 
- R-Value Work: 0.218 
- R-Value Observed: 0.218 
- Space Group: P 43
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 65.605 | α = 90 |
b = 65.605 | β = 90 |
c = 125.947 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
SCALEPACK | data scaling |
SOLVE | phasing |
Entry History 
Deposition Data
- Released Date: 2004-10-26  Deposition Author(s): Fritz, T.A., Hurley, J.H., Trinh, L.B., Shiloach, J., Tabak, L.A.
Revision History (Full details and data files)
- Version 1.0: 2004-10-26
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary