Download MendeleyCrystal structure of a Gfo/Idh/MocA family oxidoreductase from Vibrio cholerae
R Rajashankar, K., Reynes, J.A., Kniewel, R., Lima, C.D.To be published.
1XEA
Crystal structure of a Gfo/Idh/MocA family oxidoreductase from Vibrio cholerae
- PDB DOI: https://doi.org/10.2210/pdb1XEA/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Vibrio cholerae
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-09-09 Released: 2004-09-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.271
- R-Value Work: 0.227
- R-Value Observed: 0.227
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxidoreductase, Gfo/Idh/MocA family | 323 | Vibrio cholerae | Mutation(s): 7 Gene Names: VCA1048 |  | |
UniProt | |||||
Find proteins for Q9KKQ4 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KKQ4 Go to UniProtKB: Q9KKQ4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KKQ4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | E [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.271
- R-Value Work: 0.227
- R-Value Observed: 0.227
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.529 | α = 90 |
| b = 112.835 | β = 90 |
| c = 177.214 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MLPHARE | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2004-09-28 Deposition Author(s): R Rajashankar, K., Reynes, J.A., Kniewel, R., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2004-09-28
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-04-03
Changes: Data collection, Database references, Refinement description
