Download MendeleyCrystal structure of a putative DNA binding protein
Agarwal, R., Swaminathan, S.To be published.
1XD7
Crystal structure of a putative DNA binding protein
- PDB DOI: https://doi.org/10.2210/pdb1XD7/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Bacillus subtilis subsp. subtilis str. 168
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-09-04 Released: 2004-09-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.285
- R-Value Work: 0.260
- R-Value Observed: 0.260
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ywnA | 145 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0 Gene Names: ywnA |  | |
UniProt | |||||
Find proteins for P71036 (Bacillus subtilis (strain 168)) Explore P71036 Go to UniProtKB: P71036 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P71036 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.285
- R-Value Work: 0.260
- R-Value Observed: 0.260
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.892 | α = 90 |
| b = 49.362 | β = 121.61 |
| c = 51.51 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data scaling |
| SOLVE | phasing |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2004-09-21 Deposition Author(s): Agarwal, R., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2004-09-21
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2019-01-16
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-14
Changes: Data collection, Database references
