Download MendeleyCrystal structure of geranulgeranyl diphosphate synthase from Thermus thermophilus
Suto, K., Nishio, K., Nodake, Y., Hamada, K., Kawamoto, M., Nakagawa, N., Kuramitu, S., Miura, K.To be published.
1WMW
Crystal structure of geranulgeranyl diphosphate synthase from Thermus thermophilus
- PDB DOI: https://doi.org/10.2210/pdb1WMW/pdb
- Classification: TRANSFERASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2004-07-21 Released: 2005-07-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.198
- R-Value Work: 0.175
- R-Value Observed: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| geranylgeranyl diphosphate synthetase | 330 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 2.5.1 |  | |
UniProt | |||||
Find proteins for Q5SMD0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SMD0 Go to UniProtKB: Q5SMD0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SMD0 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.198
- R-Value Work: 0.175
- R-Value Observed: 0.175
- Space Group: P 43
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 139.88 | α = 90 |
| b = 139.88 | β = 90 |
| c = 73.35 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2005-07-21 Deposition Author(s): Suto, K., Nishio, K., Nodake, Y., Hamada, K., Kawamoto, M., Nakagawa, N., Kuramitu, S., Miura, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2005-07-21
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2024-03-13
Changes: Data collection, Database references
