Download MendeleyCrystal structure of a 5-formyltetrahydrofolate cycloligase-related protein from Thermus thermophilus HB8
Yanai, H., Tsuge, H., Utsunomiya, H., Yokoyama, S., Kuramitsu, S.To be published.
1WKC
Crystal structure of a 5-formyltetrahydrofolate cycloligase-related protein from Thermus thermophilus HB8
- PDB DOI: https://doi.org/10.2210/pdb1WKC/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-05-31 Released: 2004-12-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.251
- R-Value Work: 0.218
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HB8 TT1367 protein | 184 | Thermus thermophilus HB8 | Mutation(s): 2 |  | |
UniProt | |||||
Find proteins for Q5SHW9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHW9 Go to UniProtKB: Q5SHW9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SHW9 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.251
- R-Value Work: 0.218
- R-Value Observed: 0.220
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.01 | α = 90 |
| b = 73.37 | β = 90 |
| c = 107.22 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrystalClear | data reduction |
| CrystalClear | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2004-12-01 Deposition Author(s): Yanai, H., Tsuge, H., Utsunomiya, H., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2004-12-01
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
