Download MendeleyCrystal structure of an alkaline form of v8 protease from Staphylococcus aureus
Yamada, K., Ohta, M., Hasegawa, T., Torii, K., Murakami, M., Kouyama, K.To be published.
1WCZ
Crystal structure of an alkaline form of v8 protease from Staphylococcus aureus
- PDB DOI: https://doi.org/10.2210/pdb1WCZ/pdb
- Classification: HYDROLASE
- Organism(s): Staphylococcus aureus
- Mutation(s): No
- Deposited: 2004-05-10 Released: 2004-06-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.221
- R-Value Work: 0.205
- R-Value Observed: 0.212
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutamyl endopeptidase | 268 | Staphylococcus aureus | Mutation(s): 0 EC: 3.4.21.19 |  | |
UniProt | |||||
Find proteins for P0C1U8 (Staphylococcus aureus) Explore P0C1U8 Go to UniProtKB: P0C1U8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0C1U8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.221
- R-Value Work: 0.205
- R-Value Observed: 0.212
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.29 | α = 90 |
| b = 61.29 | β = 90 |
| c = 221.13 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| CNS | refinement |
| CCP4 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2004-06-01 Deposition Author(s): Yamada, K., Ohta, M., Hasegawa, T., Torii, K., Murakami, M., Kouyama, K.
Revision History (Full details and data files)
- Version 1.0: 2004-06-01
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
