Download MendeleyCrystal structure of hypothetical protein (10176122) from Bacillus halodurans at 1.46 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1VMF
CRYSTAL STRUCTURE OF a YBJQ-LIKE FOLD PROTEIN OF UNKNOWN FUNCTION (BH3498) FROM BACILLUS HALODURANS AT 1.46 A RESOLUTION
- PDB DOI: https://doi.org/10.2210/pdb1VMF/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Halalkalibacterium halodurans
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-09-23 Released: 2004-10-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.175
- R-Value Work: 0.148
- R-Value Observed: 0.150
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hypothetical protein | 145 | Halalkalibacterium halodurans | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q9K772 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9K772 Go to UniProtKB: Q9K772 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9K772 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | I [auth C] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | G [auth B], H [auth C], J [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | E [auth A], F [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| NA Query on NA | D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.175
- R-Value Work: 0.148
- R-Value Observed: 0.150
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M31VMF
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.601 | α = 90 |
| b = 58.951 | β = 90 |
| c = 134.964 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| SCALA | data scaling |
| SHELX | model building |
| SHARP | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| CCP4 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2004-10-05 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-10-05
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2017-12-20
Changes: Database references - Version 1.4: 2023-12-27
Changes: Data collection, Database references, Derived calculations
