Download MendeleyCrystal structure of Spore coat polysaccharide biosynthesis protein spsE (BSU37870) from Bacillus subtilis at 2.38 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1VLI
Crystal structure of Spore coat polysaccharide biosynthesis protein spsE (BSU37870) from Bacillus subtilis at 2.38 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1VLI/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-07-27 Released: 2004-09-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.238
- R-Value Work: 0.190
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Spore coat polysaccharide biosynthesis protein spsE | 385 | Bacillus subtilis | Mutation(s): 9 Gene Names: spsE, ipa-67d |  | |
UniProt | |||||
Find proteins for P39625 (Bacillus subtilis (strain 168)) Explore P39625 Go to UniProtKB: P39625 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P39625 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.238
- R-Value Work: 0.190
- R-Value Observed: 0.193
- Space Group: P 32 2 1
- Diffraction Data: https://doi.org/10.18430/M31VLI
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.578 | α = 90 |
| b = 70.578 | β = 90 |
| c = 205.359 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XDSauto | data collection |
| SCALA | data scaling |
| SHARP | phasing |
| autoSHARP | phasing |
| SOLOMON | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2004-09-21 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-09-21
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
