Download MendeleyCoproporphyrinogen III oxidase from Leishmania major
Structural Genomics of Pathogenic Protozoa ConsortiumTo be published.
1VJU
Coproporphyrinogen III oxidase from Leishmania major
- PDB DOI: https://doi.org/10.2210/pdb1VJU/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Leishmania major
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-03-29 Released: 2004-04-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.180
- R-Value Work: 0.151
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Coproporphyrinogen III oxidase | 309 | Leishmania major | Mutation(s): 0 EC: 1.3.3.3 |  | |
UniProt | |||||
Find proteins for P84155 (Leishmania major) Explore P84155 Go to UniProtKB: P84155 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P84155 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.180
- R-Value Work: 0.151
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.649 | α = 86.456 |
| b = 53.734 | β = 77.126 |
| c = 66.627 | γ = 61.501 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| SHELX | phasing |
| RESOLVE | phasing |
| REFMAC | refinement |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2004-04-13 Deposition Author(s): Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
Revision History (Full details and data files)
- Version 1.0: 2004-04-13
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 1.4: 2018-01-31
Changes: Database references - Version 1.5: 2023-12-27
Changes: Data collection, Database references, Derived calculations
