1VJK

Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001

PDB DOI: https://doi.org/10.2210/pdb1VJK/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Pyrococcus furiosus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-03-10 Released: 2004-08-10
Deposition Author(s): Chen, L., Liu, Z.J., Tempel, W., Shah, A., Lee, D., Rose, J.P., Eneh, J.C., Hopkins, R.C., Jenney Jr., F.E., Lee, H.S., Li, T., Poole II, F.L., Shah, C., Sugar, F.J., Adams, M.W.W., Richardson, D.C., Richardson, J.S., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.51 Å
R-Value Free: 0.224
R-Value Work: 0.210

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001 '

Chen, L., Liu, Z.J., Tempel, W., Shah, A., Lee, D., Rose, J.P., ENEH, J.C., HOPKINS, R.C., JENNEY JR., F.E., LEE, H.S., Li, T., POOLE II, F.L., SHAH, C., SUGAR, F.J., ADAMS, M.W.W., Richardson, D.C., Richardson, J.S., Wang, B.C., Southeast Collaboratory for Structural Genomics

To be published.

Macromolecule Content

Total Structure Weight: 11.2 kDa
Atom Count: 769
Modelled Residue Count: 88
Deposited Residue Count: 98
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
molybdopterin converting factor, subunit 1	A	98	Pyrococcus furiosus	Mutation(s): 0
UniProt
Find proteins for Q8U3C7 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U3C7 Go to UniProtKB: Q8U3C7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8U3C7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.51 Å
R-Value Free: 0.224
R-Value Work: 0.210
Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.467	α = 90
b = 81.467	β = 90
c = 63.698	γ = 120

Software Package:

Software Name	Purpose
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
ARP/wARP	model building
XFIT	data reduction
MolProbity	model building

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2004-08-10

Deposition Author(s):

Jenney Jr., F.E.

Richardson, D.C.

Richardson, J.S.

Southeast Collaboratory for Structural Genomics (SECSG)

Revision History (Full details and data files)

Version 1.0: 2004-08-10
Type: Initial release
Version 1.1: 2008-04-26
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description
Version 1.4: 2023-12-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.