1VJH

Crystal structure of gene product of At1g24000 from Arabidopsis thaliana

PDB DOI: https://doi.org/10.2210/pdb1VJH/pdb

Classification: PLANT PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-02-20 Released: 2004-03-16
Deposition Author(s): Wesenberg, G.E., Smith, D.W., Phillips Jr., G.N., Johnson, K.A., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.239
R-Value Work: 0.186

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 2Q3Q

Literature

1H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana.

Song, J., Zhao, Q., Lee, M.S., Markley, J.L.

(2005) J Biomol NMR 32: 335-335

PubMed: 16211487 Search on PubMed
DOI: https://doi.org/10.1007/s10858-005-8205-4
Primary Citation of Related Structures:
1VJH

Macromolecule Content

Total Structure Weight: 27.75 kDa
Atom Count: 2,015
Modelled Residue Count: 240
Deposited Residue Count: 244
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bet v I allergen family	A, B	122	Arabidopsis thaliana	Mutation(s): 0 Gene Names: At1g24000
UniProt
Find proteins for P0C0B0 (Arabidopsis thaliana) Explore P0C0B0 Go to UniProtKB: P0C0B0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0C0B0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.239
R-Value Work: 0.186
Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.681	α = 90
b = 34.261	β = 90.008
c = 78.597	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SOLVE	phasing
RESOLVE	phasing
DENZO	data reduction
SCALEPACK	data scaling
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2004-03-16

Deposition Author(s):

Center for Eukaryotic Structural Genomics (CESG)

Revision History (Full details and data files)

Version 1.0: 2004-03-16
Type: Initial release
Version 1.1: 2008-02-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description
Version 1.4: 2023-12-27
Changes: Data collection, Database references, Derived calculations

Prepare Data

Validate Data

Deposit Data

Help and Resources

1VJH

Crystal structure of gene product of At1g24000 from Arabidopsis thaliana

1H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana.

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)