Download MendeleyThree-Dimensional Strutcure of Acetylornithine aminotransferase from Thermus thermophilus HB8
Matsumura, M., Goto, M., Omi, R., Miyahara, I., Hirotsu, K.To be published.
1VEF
Acetylornithine aminotransferase from Thermus thermophilus HB8
- PDB DOI: https://doi.org/10.2210/pdb1VEF/pdb
- Classification: TRANSFERASE
- Organism(s): Thermus thermophilus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-03-30 Released: 2005-08-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.209
- R-Value Work: 0.195
- R-Value Observed: 0.195
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acetylornithine/acetyl-lysine aminotransferase | 395 | Thermus thermophilus | Mutation(s): 0 EC: 2.6.1.11 |  | |
UniProt | |||||
Find proteins for Q5SHH5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHH5 Go to UniProtKB: Q5SHH5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SHH5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | C [auth A], D [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.209
- R-Value Work: 0.195
- R-Value Observed: 0.195
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.82 | α = 90 |
| b = 70.959 | β = 107.6 |
| c = 92.083 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2005-08-02 Deposition Author(s): Matsumura, M., Goto, M., Omi, R., Miyahara, I., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2005-08-02
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
