Download MendeleyCrystal Structure of T.th. HB8 Threonine deaminase
Goto, M.To be published.
1VE5
Crystal Structure of T.th. HB8 Threonine deaminase
- PDB DOI: https://doi.org/10.2210/pdb1VE5/pdb
- Classification: LYASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-03-27 Released: 2005-04-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.245
- R-Value Work: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Threonine deaminase | 311 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 4.3.1.19 |  | |
UniProt | |||||
Find proteins for Q5SLL4 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLL4 Go to UniProtKB: Q5SLL4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SLL4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | F [auth A], H [auth B], J [auth C], L [auth D] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth A], G [auth B], I [auth C], K [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.245
- R-Value Work: 0.202
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.59 | α = 90 |
| b = 158.19 | β = 108.52 |
| c = 80.3 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2005-04-19 Deposition Author(s): Goto, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2005-04-19
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations
