Download MendeleyCrystal Structure of the C47S Mutant of Human Peroxiredoxin 5
Evrard, C., Smeets, A., Knoops, B., Declercq, J.P.(2004) J Chem Crystallogr 34: 553
1URM
HUMAN PEROXIREDOXIN 5, C47S MUTANT
- PDB DOI: https://doi.org/10.2210/pdb1URM/pdb
- Classification: ANTIOXIDANT ENZYME
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2003-10-31 Released: 2004-09-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.169
- R-Value Work: 0.146
- R-Value Observed: 0.147
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PEROXIREDOXIN 5 | 172 | Homo sapiens | Mutation(s): 1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P30044 (Homo sapiens) Explore P30044 Go to UniProtKB: P30044 | |||||
PHAROS: P30044 GTEx: ENSG00000126432 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P30044 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BEZ Query on BEZ | B [auth A] | BENZOIC ACID C7 H6 O2 WPYMKLBDIGXBTP-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A], D [auth A], E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.169
- R-Value Work: 0.146
- R-Value Observed: 0.147
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.646 | α = 90 |
| b = 65.646 | β = 90 |
| c = 122.043 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2004-09-29 Deposition Author(s): Declercq, J.P., Evrard, C.
Revision History (Full details and data files)
- Version 1.0: 2004-09-29
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2019-07-24
Changes: Data collection - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
