1U4M
human RANTES complexed to heparin-derived disaccharide III-S
- PDB DOI: https://doi.org/10.2210/pdb1U4M/pdb
- Classification: ATTRACTANT
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2004-07-26 Released: 2004-11-09 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.252 
- R-Value Work: 0.200 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small inducible cytokine A5 | 68 | Homo sapiens | Mutation(s): 0  Gene Names: CCL5, SCYA5 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P13501 (Homo sapiens) Explore P13501  Go to UniProtKB:  P13501 | |||||
PHAROS:  P13501 GTEx:  ENSG00000271503  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P13501 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ACY Query on ACY | D [auth B] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900094 Query on PRD_900094 | C | HEPARIN DISACCHARIDE III-S | Oligosaccharide / Substrate analog |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.252 
- R-Value Work: 0.200 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 24.074 | α = 90 |
b = 56.415 | β = 90 |
c = 94.354 | γ = 90 |
Software Name | Purpose |
---|---|
CNX | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |
Entry History 
Deposition Data
- Released Date: 2004-11-09  Deposition Author(s): Shaw, J.P., Johnson, Z., Borlat, F., Zwahlen, C., Kungl, A., Roulin, K., Harrenga, A., Wells, T.N.C., Proudfoot, A.E.I.
Revision History (Full details and data files)
- Version 1.0: 2004-11-09
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-08-23
Changes: Data collection, Database references, Refinement description, Structure summary